rs841735 chr20:58252368 A>G
- Sequence
cccttacaagaaaaaaaaaaaaaa[A/G]aaaaaaaagattaaattttgcatt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) CFPAC-1(pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- ATF4_HUMAN FOXA1_HUMAN SMCE1_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF4_HUMAN | n/a | 2.92 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.13 | 1.97 | 2.07 | n/a | No Hit | |||
| SMCE1_HUMAN | n/a | 2.98 | 2.50 | n/a | n/a | |||
| FOXA2_HUMAN | -0.40 | 1.78 | 1.83 | n/a | No Hit | |||
| ATF3_HUMAN | n/a | 1.14 | 2.00 | n/a | No Hit |
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Motif analysis
