rs851188 chr1:223129512 A>G
- Sequence
atccgtgcggccggacaccgtgtc[A/G]ggcccgcgaggagggctctgccgc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LNCaP (prostate carcinoma) MCF7L-P(immortalized breast epithelial cell line) glioblastoma cells
- ASB for transcription factors
- PAX2_HUMAN RARA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PAX2_HUMAN | -3.90 | 1.77 | 2.00 | n/a | n/a | |||
| RARA_HUMAN | 2.08 | -1.64 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Thyroid