rs867677 chr4:78592453 A>C

Sequence
tttcagttactttaaatgtgaaaa[A/C]cttatgaaggttgaacccacaaca
ASB in cell types
GM02610 (Lymphoblastoid Cell Lines) foreskin keratinocyte GM12890 (Lymphoblastoid Cell Lines)
ASB for transcription factors
STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 0.28 1.35 1.002.4·10-3 1.05 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  aortic valve calcium,  ldl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Lung,  Pituitary

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