rs872010 chr16:90022379 G>A
- Sequence
ccttcaatggtccttcatcagcac[G/A]tctttactgagcacgtgctgtgtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) WA01 (H1, human embryonic stem cells) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- MEF2B_HUMAN ANDR_HUMAN BHE40_HUMAN ZN687_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | -2.75 | 1.55 | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | 2.71 | -1.91 | 2.00 | n/a | No Hit | |||
| BHE40_HUMAN | -3.09 | 1.87 | 1.50 | n/a | No Hit | |||
| ZN687_HUMAN | -2.99 | 3.04 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Hippocampus, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid