rs875742 chr5:173860760 G>A
- Sequence
tccctctgcccagagccttccggg[G/A]acgccagccagccaggccctgctg
- ASB in cell types
- K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts pancreas
- ASB for transcription factors
- CTCF_HUMAN NCOR1_HUMAN TIF1A_HUMAN NFIC_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.40 | 2.38 | 1.00 | -3.00 | Discordant | |||
| NCOR1_HUMAN | 1.24 | -3.73 | 2.00 | n/a | n/a | |||
| TIF1A_HUMAN | 2.04 | -0.92 | 2.00 | n/a | n/a | |||
| NFIC_HUMAN | 1.43 | n/a | 2.00 | -3.24 | Concordant |
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Motif analysis
