rs876771 chr2:216283694 C>A
- Sequence
gcaaggctggtgtgtgcacttgac[C/A]gagccatcacagcggcatgggctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18951 (B-cells Lymphoblastoid Cell Lines) foreskin keratinocyte HCT-116 (colon carcinoma)
- ASB for transcription factors
- STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.16 | 0.68 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.00 | 0.59 | 1.27 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg