rs876933 chr2:65382303 C>T

Sequence
aaggctggtccaggaagaaggcta[C/T]gaagaagaagaagaaaaaaaagcc
ASB in cell types
MS-1 (Small cell lung carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.85 3.34 1.006.1·10-6 1.25 n/a No Hit
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  body mass index (bmi),  height,  rheumatoid arthritis,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Colon_Sigmoid,  Nerve_Tibial,  Ovary,  Prostate,  Testis,  Thyroid

Download