rs883954 chr9:38642157 G>A
- Sequence
attttgcagaagttggagaggagt[G/A]cactagatggggctgttggcttgc
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines) HeLa S3 (cervical adenocarcinoma) pancreas
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.50 | 1.91 | 1.61 | 0.57 | Weak Concordant | |||
| STAG1_HUMAN | -1.33 | 1.73 | 1.22 | n/a | n/a | |||
| RAD21_HUMAN | -0.41 | 2.18 | 1.70 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Putamen_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial