rs889163 chr19:53808851 G>A
- Sequence
ctgtaggatgtttgcagcattccc[G/A]gcctttatccactagatgtcagta
- ASB in cell types
- A549 (lung carcinoma) THP-1 (acute monocytic leukemia) Kelly (neuroblastoma) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.33 | 0.42 | 1.22 | n/a | No Hit | |||
| RAD21_HUMAN | 1.44 | 0.15 | 1.08 | n/a | n/a | |||
| SMC3_HUMAN | 1.51 | -0.22 | 1.12 | n/a | n/a | |||
| STAG1_HUMAN | 2.40 | 0.17 | 1.22 | n/a | n/a |
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