rs890959 chr5:784991 T>G
- Sequence
agtggcagcgaggcccctcacctg[T/G]ctctggggccccccggggacgacc
- ASB in cell types
- neural cell HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) MOLM-13(acute monocytic leukemia(AML), Homo sapiens)
- ASB for transcription factors
- GABP1_HUMAN ANDR_HUMAN KMT2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | 2.79 | n/a | 1.33 | n/a | n/a | |||
| ANDR_HUMAN | 2.66 | -1.87 | 2.00 | n/a | No Hit | |||
| KMT2A_HUMAN | 2.44 | -2.02 | 1.50 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid