rs899013 chr11:10455142 A>G
- Sequence
taaacaactgacccatccttcctg[A/G]gctcttctccccaggatttcaaca
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes BEAS-2B (bronchial epithelium) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN T2FA_HUMAN BRCA2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 3.92 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | -0.05 | 1.59 | 1.36 | n/a | No Hit | |||
| T2FA_HUMAN | n/a | 2.44 | 2.00 | n/a | n/a | |||
| BRCA2_HUMAN | -0.14 | 1.91 | 1.00 | n/a | n/a | |||
| NFAC3_HUMAN | 0.01 | 2.57 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Stomach, Thyroid, Uterus, Whole_Blood