rs908197 chr2:219279688 G>C
- Sequence
gtcaccggccgcaagcagagcccg[G/C]tgtgctccgcttccaactgggagc
- ASB in cell types
- keratinocytes MOLM14 (Adult acute myeloid leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SNAI2_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 1.96 | -1.40 | 1.00 | n/a | No Hit | |||
| CDK8_HUMAN | -0.10 | 1.36 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood