rs912901 chr1:182391708 C>G
- Sequence
cgccgagcaggcgggcgggtaaag[C/G]taggccgcgagagcgaggttagga
- ASB in cell types
- tibial nerve K562 (myelogenous leukemia) fetal bone marrow-derived mononuclear cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN KMT2A_HUMAN IKZF2_HUMAN RFOX2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.71 | 2.62 | 1.15 | n/a | No Hit | |||
| KMT2A_HUMAN | 0.09 | 3.81 | 1.50 | n/a | n/a | |||
| IKZF2_HUMAN | 3.12 | n/a | 1.00 | n/a | n/a | |||
| RFOX2_HUMAN | 1.91 | -1.61 | 3.00 | n/a | n/a | |||
| STAT1_HUMAN | -3.76 | 1.60 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid