rs9297769 chr8:127852085 A>G

Sequence
gggtagcccatacccaggctcagc[A/G]gcagttggggagctgcctcgattt
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte
ASB for transcription factors
FOXA1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.21 0.85 1.004.5·10-4 1.76 n/a No Hit
CTCF_HUMAN 0.86 0.35 0.051.00 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  refractive error,  serum creatinine,  total cholesterol
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia

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