rs934824 chr2:230867417 G>C
- Sequence
gtttctggcaaggagccaggcctc[G/C]tctcctgcccccagcagtgagcag
- ASB in cell types
- HEK293 (embryonic kidney) EOL-1 (Acute myeloid leukemia) H929 (plasma cell myeloma) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN PRDM9_HUMAN SMRC1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.19 | 1.87 | 1.62 | n/a | No Hit | |||
| PRDM9_HUMAN | -0.57 | 1.78 | 2.00 | n/a | n/a | |||
| SMRC1_HUMAN | n/a | 2.08 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Mucosa, Esophagus_Muscularis, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid