rs9379687 chr6:24721559 C>A
- Sequence
acaaacctagaactcaattcgaca[C/A]ctggaatttaaacggcgtgcggga
- ASB in cell types
- CD14+ monocytes 22RV1 (prostate carcinoma) A549 (lung carcinoma) breast tumor
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.68 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 3.02 | n/a | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.04 | -4.71 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), lp-pla2 activity
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg