rs9382212 chr6:53466003 T>C
- Sequence
aaattgtgcaacagttgaggctgc[T/C]gtttactaactcccacatccactt
- ASB in cell types
- breast tumor xenograft liver HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN HLF_HUMAN RXRA_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.75 | -1.19 | 1.43 | -4.72 | Concordant | |||
| HLF_HUMAN | 3.34 | n/a | 2.00 | n/a | No Hit | |||
| RXRA_HUMAN | 2.43 | -4.27 | 1.50 | n/a | No Hit | |||
| SP1_HUMAN | 2.67 | -4.74 | 1.50 | n/a | No Hit |
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Motif analysis
