rs9392962 chr6:8102257 T>C
- Sequence
tggttaacccctccctccaggagg[T/C]aggatggcaggggccgaggcccag
- ASB in cell types
- HepG2 (hepatoblastoma) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | -0.20 | 1.54 | 2.58 | 1.81 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, college completion, fasting blood glucose, height, infant head circumference, parkinsons disease, serum creatinine, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood