rs941529 chr1:1909167 G>A
- Sequence
gggaaagcgcggagcttccgacgc[G/A]gggcggggcttccaggtggggcgg
- ASB in cell types
- 22RV1 (prostate carcinoma) GM02630 (Fanconi anemi) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ANDR_HUMAN TIF1B_HUMAN TCF21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.93 | -1.15 | 2.00 | n/a | No Hit | |||
| TIF1B_HUMAN | 2.33 | -1.93 | 1.00 | n/a | n/a | |||
| TCF21_HUMAN | 2.50 | n/a | 3.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.55 | -0.65 | 1.17 | n/a | n/a | |||
| CTCF_HUMAN | 0.69 | 0.55 | 1.39 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood