rs9419 chr19:38831447 T>G
- Sequence
tcaccgagggctactccggaagcc[T/G]cctcttgtgcagaggagccagtga
- ASB in cell types
- MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MS-1 (Small cell lung carcinoma) NOMO-1 (acute monocytic leukemia)
- ASB for transcription factors
- CDN1B_HUMAN JUN_HUMAN ZF64B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | -0.64 | 2.31 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 0.45 | 1.53 | 2.00 | n/a | No Hit | |||
| ZF64B_HUMAN | -1.40 | 1.66 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, parkinsons disease, salmonella-induced pyroptosis, serum creatinine, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood