rs9424320 chr1:2413486 T>C
- Sequence
gctggacctgccctgagctggggg[T/C]gggaagggctggggcgggaactgg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- EGR1_HUMAN NRF1_HUMAN EP400_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | -0.10 | 1.92 | 1.33 | -5.20 | Discordant | |||
| NRF1_HUMAN | -0.91 | 1.75 | 1.00 | n/a | No Hit | |||
| EP400_HUMAN | -2.04 | 2.53 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Heart_Atrial_Appendage, Nerve_Tibial, Whole_Blood