rs9429742 chr1:114380168 C>T
- Sequence
ggagaggtaacagtcaaaagcata[C/T]acccactactctctcactacctag
- ASB in cell types
- K562 (myelogenous leukemia) HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- EGR1_HUMAN NFIC_HUMAN NCOR1_HUMAN MEIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 1.34 | -2.39 | 1.50 | -2.74 | Concordant | |||
| NFIC_HUMAN | 0.92 | -0.92 | 1.00 | n/a | No Hit | |||
| NCOR1_HUMAN | 0.84 | -0.44 | 1.00 | n/a | n/a | |||
| MEIS2_HUMAN | 0.96 | -0.96 | 1.00 | n/a | No Hit | |||
| SMCA4_HUMAN | 0.85 | -0.68 | 1.00 | n/a | n/a |
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Motif analysis
