rs9435695 chr1:16905229 A>G

Sequence
tgtagagcacatgttatggttatc[A/G]aagtggtttactgtaaggctgagg
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma)
ASB for transcription factors
MBD4_HUMAN RFOX2_HUMAN TBP_HUMAN ARI1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MBD4_HUMAN 2.48 0.16 1.1·10-81.00 1.75 n/a n/a
RFOX2_HUMAN 2.53 -0.33 5.3·10-71.00 1.33 n/a n/a
TBP_HUMAN 2.61 2.97 6.7·10-75.6·10-7 1.75 n/a No Hit
ARI1B_HUMAN 2.79 n/a 1.4·10-61.00 3.00 n/a n/a
KDM5B_HUMAN 3.16 -4.97 7.9·10-61.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

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