rs9435780 chr1:16905192 C>T
- Sequence
tggagctgtggcggggcggaagtt[C/T]acatgtgtggtatgtagagcacat
- ASB in cell types
- HepG2 (hepatoblastoma) HT29 (colon adenocarcinoma) MDA-MB-453 (breast adenocarcinoma) adult erythroblasts
- ASB for transcription factors
- FOXA1_HUMAN ZBT40_HUMAN JUND_HUMAN MAF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.21 | 2.51 | 2.05 | n/a | No Hit | |||
| ZBT40_HUMAN | 1.55 | -0.01 | 1.42 | n/a | n/a | |||
| JUND_HUMAN | 0.97 | 3.26 | 1.50 | n/a | No Hit | |||
| MAF_HUMAN | n/a | 2.79 | 2.50 | n/a | No Hit | |||
| SUH_HUMAN | 2.68 | 0.05 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (geographic atrophy), cystatin c in serum, height, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood