rs9471653 chr6:41787672 C>G
- Sequence
ggcgacgccgatacggttcctcca[C/G]cgaggcccatgcgaagctttccac
- ASB in cell types
- foreskin keratinocyte HCC1806(Squamous cell breast carcinoma, acantholytic variant) HCT-116 (colon carcinoma) CD14+ monocytes
- ASB for transcription factors
- BRD2_HUMAN HCFC1_HUMAN STAT1_HUMAN MED26_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | -0.27 | 2.03 | 1.86 | n/a | n/a | |||
| HCFC1_HUMAN | 1.48 | 0.32 | 1.75 | n/a | n/a | |||
| STAT1_HUMAN | 2.29 | 0.62 | 1.67 | n/a | No Hit | |||
| MED26_HUMAN | 1.78 | -0.46 | 1.00 | n/a | n/a | |||
| KDM6A_HUMAN | 1.47 | -0.51 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Vagina, Whole_Blood