rs9474 chr6:87702050 A>G

Sequence
cgcctgaggcgcttctgtgctgag[A/G]ctagatcctttctgaagtcgaaaa
ASB in cell types
primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
FOXK2_HUMAN STAG1_HUMAN RBBP5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 2.38 -3.87 3.4·10-41.00 1.50 n/a n/a
STAG1_HUMAN 1.20 -0.19 0.011.00 1.00 n/a n/a
RBBP5_HUMAN 2.14 n/a 0.021.00 2.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol
GTEx eQTL Artery_Tibial,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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