rs9504369 chr6:5261342 T>C
- Sequence
cgccctcggcgctgcctgagagag[T/C]ttgcgggatttcaagggtgacttg
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) MDA-MB-231 (breast adenocarcinoma) GM19240 (B cells Lymphoblastoid Cell Lines) breast tumor
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN RARA_HUMAN TRI25_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.35 | 1.40 | 2.10 | n/a | No Hit | |||
| ZFX_HUMAN | -0.72 | 1.67 | 1.00 | n/a | No Hit | |||
| RARA_HUMAN | 0.71 | 0.23 | 1.06 | -0.73 | Weak Concordant | |||
| TRI25_HUMAN | n/a | 3.56 | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.08 | 1.54 | 1.47 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Thyroid, Whole_Blood