rs951629 chr2:9656662 G>A
- Sequence
atctgactgagaggagtggataat[G/A]acttccctttttaaaaactttctt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma) CFPAC-1(pancreatic ductal adenocarcinoma) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- FOXA2_HUMAN SPI1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 0.85 | 1.35 | 1.73 | n/a | No Hit | |||
| SPI1_HUMAN | 2.16 | -0.84 | 2.00 | -1.79 | Weak Concordant | |||
| JUN_HUMAN | 0.24 | 1.34 | 1.08 | n/a | No Hit |
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Motif analysis
