rs9517725 chr13:99432879 T>C
- Sequence
tttgaactggctttctcacacttg[T/C]gaaagtgcgcccaaggacgcagga
- ASB in cell types
- CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line) HUVEC-C (HUVEC, umbilical vein endothelial cells) MDM(monocyte derived macrophages)
- ASB for transcription factors
- STAT1_HUMAN TF65_HUMAN SPI1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 0.48 | 3.29 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | -0.48 | 2.21 | 3.12 | n/a | No Hit | |||
| SPI1_HUMAN | -0.02 | 2.29 | 1.69 | n/a | No Hit | |||
| FOXK2_HUMAN | -5.02 | 3.13 | 1.50 | n/a | n/a | |||
| CEBPA_HUMAN | -4.53 | 1.90 | 1.75 | -1.25 | Weak Discordant |
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Motif analysis
