rs9605473 chr22:17980500 A>G

Sequence
tcctagtgggcaaggacaactttc[A/G]gctcctggaaaaccatcagcagag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ARI1B_HUMAN FOXK2_HUMAN HDAC1_HUMAN IKZF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARI1B_HUMAN 1.87 -1.66 0.011.00 1.00 n/a n/a
FOXK2_HUMAN 1.92 -0.33 0.021.00 1.00 n/a n/a
HDAC1_HUMAN 0.57 1.96 1.000.03 1.00 n/a n/a
IKZF1_HUMAN 1.42 -0.92 0.051.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol lp-pla2 activity major depressive disorder triglycerides
GTEx eQTL Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Pancreas Skin_Not_Sun_Exposed_Suprapubic Thyroid Whole_Blood

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