rs9636442 chr2:62579151 A>G
- Sequence
gccgaagctggcggatcaattgag[A/G]tcaagagtttgagaccagcctggc
- ASB in cell types
- HMLE-Twist-ER (breast cancer) TTC-1240 (Rhabdoid tumor of the kidney) MCF10A (breast epithelial cells) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- TCF21_HUMAN SMAD3_HUMAN NCOA3_HUMAN SMRC1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | n/a | 1.50 | 3.00 | n/a | n/a | |||
| SMAD3_HUMAN | -0.08 | 3.21 | 1.40 | n/a | No Hit | |||
| NCOA3_HUMAN | -2.35 | 2.70 | 1.00 | n/a | n/a | |||
| SMRC1_HUMAN | -0.05 | 1.33 | 1.10 | n/a | n/a | |||
| RAD21_HUMAN | 1.18 | 0.45 | 1.05 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial