rs9653741 chr21:17819418 T>G
- Sequence
ctggccccgccctctcccgccggc[T/G]ccatcccgtaaaggctgcggggag
- ASB in cell types
- thymus-derived CD34- cells MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) pancreatic ductal adenocarcinoma
- ASB for transcription factors
- BC11B_HUMAN TYY1_HUMAN CDN1B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | n/a | 3.56 | 2.00 | n/a | n/a | |||
| TYY1_HUMAN | -0.42 | 1.17 | 1.40 | 2.80 | Concordant | |||
| CDN1B_HUMAN | -1.20 | 1.61 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis