rs9660685 chr1:16645298 G>C
- Sequence
ctggaacccagacctctggcagct[G/C]tcactttcacaatgcccttgggct
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- PRD10_HUMAN REQU_HUMAN RING2_HUMAN NCOR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | 2.45 | -0.98 | 2.00 | n/a | n/a | |||
| REQU_HUMAN | 2.83 | n/a | 2.75 | n/a | n/a | |||
| RING2_HUMAN | 2.09 | n/a | 2.50 | n/a | n/a | |||
| NCOR1_HUMAN | 1.98 | -0.69 | 2.33 | n/a | n/a | |||
| FOXK2_HUMAN | 2.44 | -0.11 | 1.75 | n/a | n/a |
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Motif analysis
