rs9712275 chr2:198042419 C>T
- Sequence
tctgcaatagcacaccagctgaac[C/T]ggaaggtgatgagaattgaggtgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ELF1_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 2.19 | -1.85 | 1.00 | -3.70 | Concordant | |||
| TBX21_HUMAN | 2.33 | -2.17 | 1.00 | -0.57 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Spleen, Testis, Thyroid, Whole_Blood