rs9713 chr2:161308497 A>T

Sequence
ctgattcatcgccggtttgcagac[A/T]gagccgcgtcgggtgtgcgccgct
ASB in cell types
K562 (myelogenous leukemia) adult erythroblasts primary B-CLL cells
ASB for transcription factors
RBBP5_HUMAN ILF3_HUMAN MNT_HUMAN LIN9_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBBP5_HUMAN 0.34 2.39 0.731.9·10-4 1.67 n/a n/a
ILF3_HUMAN 1.89 -1.33 7.9·10-31.00 1.00 n/a n/a
MNT_HUMAN -0.78 0.89 1.000.01 1.00 n/a n/a
LIN9_HUMAN 1.76 -0.67 0.021.00 1.00 n/a n/a
MEIS2_HUMAN -1.49 1.84 1.000.05 1.00 n/a No Hit
Items per page:
1 – 5 of 5

Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease college completion triglycerides change with statins years of education
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Breast_Mammary_Tissue Cells_EBV-transformed_lymphocytes Colon_Transverse Esophagus_Mucosa Kidney_Cortex Liver Lung Minor_Salivary_Gland Nerve_Tibial Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid Uterus Vagina Whole_Blood

Download