ADASTRA v5.1.3
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rs973009
chr19:38683692
G
>
A
Sequence
ctgtgcagtccgggaaccgatttg[G/A]tatggggtcagttaacatgctgtc
ASB in cell types
K562 (myelogenous leukemia)
CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
SMCA4_HUMAN
TRPS1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCA4_HUMAN
-0.12
1.16
1.00
0.01
1.25
n/a
n/a
TRPS1_HUMAN
0.46
1.61
1.00
0.03
1.00
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
EMBL-EBI
migraine with aura
GRASP
hypertension
,
prostate cancer
,
salmonella-induced pyroptosis
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Skin_Sun_Exposed_Lower_leg
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)