rs9812514 chr3:72996720 A>G
- Sequence
gacgccactgggccccagcgtcac[A/G]cctcggccgcgcacgcgctctcgg
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) Th1-cells
- ASB for transcription factors
- TYY1_HUMAN ZFX_HUMAN TBX21_HUMAN ZN189_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.35 | 1.22 | 1.50 | n/a | No Hit | |||
| ZFX_HUMAN | 0.86 | 1.94 | 1.82 | n/a | No Hit | |||
| TBX21_HUMAN | 1.60 | -1.28 | 1.00 | -6.93 | Concordant | |||
| ZN189_HUMAN | n/a | 2.67 | 1.00 | n/a | n/a | |||
| ZBT26_HUMAN | -0.70 | 0.70 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid