rs9812514 chr3:72996720 A>G

Sequence
gacgccactgggccccagcgtcac[A/G]cctcggccgcgcacgcgctctcgg
ASB in cell types
HEK293 (embryonic kidney) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) Th1-cells
ASB for transcription factors
TYY1_HUMAN ZFX_HUMAN TBX21_HUMAN ZN189_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 1.35 1.22 1.003.3·10-6 1.50 n/a No Hit
ZFX_HUMAN 0.86 1.94 1.001.4·10-5 1.82 n/a No Hit
TBX21_HUMAN 1.60 -1.28 7.9·10-31.00 1.00 -6.93 Concordant
ZN189_HUMAN n/a 2.67 1.000.01 1.00 n/a n/a
ZBT26_HUMAN -0.70 0.70 1.000.01 1.00 n/a n/a
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Motif analysis

PATZ1_HUMAN Weak Concordant
PATZ1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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