rs9824430 chr3:100090528 C>G
- Sequence
acagagatgcatgacttgcccagg[C/G]cctcccagtggtaggttatgaaac
- ASB in cell types
- epithelial cell of prostate CTV-1 (Adult T acute lymphoblastic leukemia) glioblastoma cells SK-N-AS (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN SMCA4_HUMAN RAD21_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.18 | 2.22 | 1.16 | 3.39 | Concordant | |||
| SMCA4_HUMAN | -0.46 | 1.57 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | -1.81 | 2.20 | 1.00 | n/a | n/a | |||
| TBX21_HUMAN | -0.44 | 1.68 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg