rs9851576 chr3:52057238 A>G

Sequence
cgtgggcaggtgtggagaaatcct[A/G]gaaaggaccagctttgggaaggga
ASB in cell types
HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) Kelly (neuroblastoma) HepG2 (hepatoblastoma)
ASB for transcription factors
ZN692_HUMAN RBM25_HUMAN SP7_HUMAN KLF8_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN692_HUMAN -2.77 3.17 1.003.5·10-5 1.00 n/a n/a
RBM25_HUMAN -3.43 1.38 1.006.8·10-4 2.00 n/a n/a
SP7_HUMAN -2.29 2.67 1.003.9·10-3 1.00 n/a n/a
KLF8_HUMAN -2.04 2.42 1.007.3·10-3 1.00 n/a No Hit
MYCN_HUMAN -2.12 2.50 1.000.01 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP alzheimers disease (apoe3 homozygotes),  chronic kidney disease,  hip bone mineral density (bmd),  hypertension (early onset hypertension),  serum creatinine,  sporadic creutzfeldt-jakob disease
GTEx eQTL Cells_Cultured_fibroblasts,  Nerve_Tibial

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