rs9865071 chr3:27021747 T>G

Sequence
agcaatccaaggaacaaatccaaa[T/G]agtaaacagagtaccagtttatta
ASB in cell types
VCaP (prostate carcinoma) LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.14 1.23 1.001.3·10-5 1.59 3.38 Concordant
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Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  fasting blood glucose,  height,  obesity with early age of onset (age >2),  waist hip ratio
GTEx eQTL Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Testis

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