rs9869029 chr3:184017498 C>G
- Sequence
gttcccacagcccgctccggcctg[C/G]ccaggcgagcgcgacccacaccca
- ASB in cell types
- HepG2 (hepatoblastoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) adrenal gland GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RBM25_HUMAN CTCF_HUMAN ZN121_HUMAN JUN_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | -2.01 | 2.45 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.77 | 0.46 | 1.36 | 1.48 | Weak Discordant | |||
| ZN121_HUMAN | -0.43 | 1.94 | 1.25 | 3.43 | Concordant | |||
| JUN_HUMAN | 1.55 | n/a | 4.50 | n/a | No Hit | |||
| PAX5_HUMAN | 2.67 | -2.54 | 1.00 | 2.60 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Testis, Thyroid, Whole_Blood