rs9889281 chr17:58631746 T>C
- Sequence
atcccactcgtgagagaacacaaa[T/C]atctccctctcgcggtttccagcg
- ASB in cell types
- CD14+ monocytes transverse colon breast tumor esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN ESR1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.72 | 0.02 | 1.65 | -0.16 | Weak Concordant | |||
| STAT1_HUMAN | 3.03 | n/a | 3.00 | n/a | No Hit | |||
| ESR1_HUMAN | 3.13 | n/a | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.58 | 0.99 | 2.00 | 0.69 | Weak Concordant | |||
| TP53B_HUMAN | 1.75 | -3.24 | 1.50 | n/a | n/a |
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Motif analysis
