rs9893741 chr17:40069159 G>C
- Sequence
ctctctctccccctccccctctct[G/C]tctctccctccttctctccctccc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ZBT26_HUMAN ZN335_HUMAN SP3_HUMAN PATZ1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 1.88 | n/a | 2.00 | n/a | n/a | |||
| ZN335_HUMAN | 1.96 | n/a | 2.00 | n/a | No Hit | |||
| SP3_HUMAN | 2.98 | -4.98 | 1.50 | 1.06 | Weak Discordant | |||
| PATZ1_HUMAN | 2.23 | -3.91 | 1.50 | 4.06 | Discordant | |||
| SCRT2_HUMAN | 2.55 | -2.29 | 1.00 | n/a | n/a |
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Motif analysis
