rs9894790 chr17:8173460 C>T
- Sequence
aagtgatcgtcagaaagaatcaga[C/T]aggagcaatcagggtgttgcaagt
- ASB in cell types
- A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) MOLM14 (Adult acute myeloid leukemia) pancreas
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN GATA1_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.06 | -0.28 | 2.54 | n/a | No Hit | |||
| BCL3_HUMAN | 2.39 | n/a | 3.00 | n/a | n/a | |||
| GATA1_HUMAN | -0.03 | 3.09 | 1.75 | 5.05 | Concordant | |||
| CDK8_HUMAN | 1.07 | -0.74 | 1.00 | n/a | n/a | |||
| SSRP1_HUMAN | 2.25 | -1.26 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Spleen, Testis, Whole_Blood