rs9897606 chr17:64497049 A>G
- Sequence
accactaccgttaacagaatccgg[A/G]gaggccacggcgcaggcgcaacgg
- ASB in cell types
- HEK293 (embryonic kidney) fetal bone marrow-derived mononuclear cells breast tumor Th1-cells
- ASB for transcription factors
- KMT2A_HUMAN ESR1_HUMAN ZNF76_HUMAN ZN394_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | -0.17 | 2.76 | 1.12 | n/a | n/a | |||
| ESR1_HUMAN | 3.34 | n/a | 2.00 | n/a | No Hit | |||
| ZNF76_HUMAN | -2.33 | 2.73 | 1.00 | 0.33 | Weak Concordant | |||
| ZN394_HUMAN | -5.54 | 3.21 | 2.00 | n/a | No Hit | |||
| ZFHX2_HUMAN | -3.60 | 2.20 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood