rs990510 chr17:34542932 C>A
- Sequence
taactccagggggcgccatgcaca[C/A]aggcacaaggtctgacacatagta
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) T47D (invasive ductal carcinoma) MS-1 (Small cell lung carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN RAD21_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.79 | 1.01 | 1.04 | n/a | n/a | |||
| CTCF_HUMAN | 0.69 | 0.82 | 1.40 | n/a | No Hit | |||
| RAD21_HUMAN | 0.47 | 1.33 | 1.73 | n/a | n/a | |||
| SMC1A_HUMAN | -1.02 | 1.58 | 1.00 | n/a | n/a |
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