rs9909295 chr17:32127701 T>C
- Sequence
gatatgagcagaaaaactggaaga[T/C]ggacttcttcaataaggcagcggg
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts CD14+ monocytes 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- GATA1_HUMAN STAT1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | n/a | 3.78 | 2.50 | n/a | No Hit | |||
| STAT1_HUMAN | 2.06 | 0.02 | 1.83 | n/a | No Hit | |||
| ANDR_HUMAN | 2.06 | 0.52 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP asthma, height, ldl cholesterol change with statins, total cholesterol, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Uterus, Whole_Blood