rs9916601 chr17:79733220 C>T
- Sequence
caccaggatccctgcacacgcatt[C/T]gtgcctgtgtgcccgtccagctgt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MDM(monocyte derived macrophages) CD34+ hematopoietic stem cells-derived proerythroblasts
- ASB for transcription factors
- RAD51_HUMAN ELF1_HUMAN SKIL_HUMAN ARNT_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | 3.37 | -3.11 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 3.13 | -2.80 | 1.00 | n/a | No Hit | |||
| SKIL_HUMAN | 3.38 | -3.52 | 1.00 | n/a | n/a | |||
| ARNT_HUMAN | 3.39 | -0.56 | 1.50 | -4.02 | Concordant | |||
| MEF2B_HUMAN | 2.17 | -3.76 | 1.50 | n/a | No Hit |
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Motif analysis
