rs9963939 chr18:38545260 G>A
- Sequence
ctctctctcccattagggggagct[G/A]ctgagatgcattgatgctgttctc
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) GM17942 (lymphoblastoid cell) GM02255 (Lymphoblastoid Cell Lines) IMR-5 (Neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.90 | 0.36 | 1.81 | 0.16 | Weak Discordant | |||
| RAD21_HUMAN | 2.50 | -3.91 | 1.33 | n/a | n/a |
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Motif analysis
