rs9964406 chr18:12377416 C>T
- Sequence
caggaggcggggccgagaaggacc[C/T]tggagggcaagggggagctagagg
- ASB in cell types
- HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) neural cell GM01310 ( Transformed lymphovlasoid cell line )
- ASB for transcription factors
- SP4_HUMAN ANDR_HUMAN AHR_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP4_HUMAN | 3.54 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.54 | -0.81 | 2.00 | n/a | No Hit | |||
| AHR_HUMAN | 1.62 | -0.81 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.11 | -4.57 | 2.00 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.02 | -4.48 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood